Journal: International Journal of Biomedical Imaging

Article Title: High-Speed GPU-Based Fully Three-Dimensional Diffuse Optical Tomographic System

doi: 10.1155/2014/376456

Figure Lengend Snippet: Execution time for Jacobian calculation by conventional and Broyden method on C CPU, C GPU, MATLAB CPU, and MATLAB GPU platforms for mesh size (a) 3736, (b) 7465, and (c) 15031.

Article Snippet: The corresponding MATLAB based GPU program took 0.86 seconds.

Techniques:

Journal: International Journal of Biomedical Imaging

Article Title: High-Speed GPU-Based Fully Three-Dimensional Diffuse Optical Tomographic System

doi: 10.1155/2014/376456

Figure Lengend Snippet: Breakup of the execution time of various computing blocks of the algorithm on C CPU, C GPU, MATLAB CPU, and MATLAB GPU platforms for mesh size (a) 3736, (b) 7465, and (c) 15031.

Article Snippet: The corresponding MATLAB based GPU program took 0.86 seconds.

Techniques:

Journal: International Journal of Biomedical Imaging

Article Title: High-Speed GPU-Based Fully Three-Dimensional Diffuse Optical Tomographic System

doi: 10.1155/2014/376456

Figure Lengend Snippet: Execution time for an iteration on C CPU, C GPU, MATLAB CPU, and MATLAB GPU platforms for different mesh sizes.

Article Snippet: The corresponding MATLAB based GPU program took 0.86 seconds.

Techniques:

Journal: eLife

Article Title: Plasticity of Escherichia coli cell wall metabolism promotes fitness and antibiotic resistance across environmental conditions

doi: 10.7554/eLife.40754

Figure Lengend Snippet: ( A–B ) Single cell elongation rates for wild-type (MG1655), ∆ mrcA (EAM543), and ∆ mrcB (EAM546) cells during growth on agarose pads at pH 4.5 (A; n = 134, 81, and 155 cells) and pH 8.0 (B; n = 386, 257, and 246 cells). Rates were determined in the MATLAB-based program SuperSegger as described in the methods. Error bars represent SD. ( C–D ) Micrographs depicting representative images of propidium iodide incorporation in ∆ mrcA (D, left) and ∆ mrcB (C, left) mutants at t = 0 or 60 min post indicated pH shift. Scale bar represents 5 μm. Cell viability curves for wild-type, ∆ mrcA (PBP1a), and ∆ mrcB (PBP1b) strains after acidic (D, right) or alkaline pH (C, right) shift as indicated. Cell death was determined by uniform cytoplasmic staining with propidium iodide. Markers indicate mean percent viability ± SD of three biological replicates. Greater than 100 cells were analyzed for each strain at each time point per replicate.

Article Snippet: Cell dimensions were quantified in the MATLAB-based program SuperSegger ( ).

Techniques: Staining

Journal: Cell Death & Disease

Article Title: Opposing roles for GSK3β and ERK1-dependent phosphorylation of huntingtin during neuronal dysfunction and cell death in Huntington’s disease

doi: 10.1038/s41419-025-07524-0

Figure Lengend Snippet:

Article Snippet: MATLAB-based particle tracking program , Laboratory of Danuser , [ , ] .

Techniques: Transduction, Recombinant, Protease Inhibitor, Magnetic Beads, Plasmid Preparation, In Situ, Software, Imaging

Journal: Concepts in magnetic resonance. Part A, Bridging education and research

Article Title: Continuous wave electron paramagnetic resonance of nitroxide biradicals in fluid solution

doi: 10.1002/cmr.a.21426

Figure Lengend Snippet: Changes in EPR spectra of an 15N isotopically labeled dinitroxide as J increases. A) Stick diagram calculated with CuNO 31 using ν = 9.852 GHz, g = 2.006, AN = 22.4 G, and Gaussian absorption line width of 0.2 G for J = 0, J = 0.5 AN, J = 2 AN, and J >> AN. For the AB pattern resulting from (mI(1),mI(2)) = (−1/2,1/2) or (1/2,−1/2) there are 4 lines centered at Bavg with positions and relative intensities as shown in Table 1. The resonances for (mI(1), mI(2)) = (1/2,1/2) and (−1/2,−1/2) are independent of J and occur at the positions labeled MI = 1 and −1, respectively. The changes in the positions of the lines as J increases are discussed in the text and shown with dashed lines for AB splitting pattern c. B) First derivative spectra calculated with dynbirm with the same parameters.

Article Snippet: The MatLab-based program dynbirm is available upon request to the corresponding author.

Techniques: Labeling

Journal: Concepts in magnetic resonance. Part A, Bridging education and research

Article Title: Continuous wave electron paramagnetic resonance of nitroxide biradicals in fluid solution

doi: 10.1002/cmr.a.21426

Figure Lengend Snippet: Absorption EPR spectra (solid lines) of VI at 20°C in aqueous tris buffer recorded at A) 258 MHz and B) 1.09 GHz by rapid scan, and C) at 9.854 G by CW EPR. The spectrum in C) is the first integral of the CW spectrum. Spectra were obtained with RF or microwave power that is small enough that it does not impact the line shape. The dashed lines are simulations obtained with dynbirm using g = 2.0051 and AN = 44.95 MHz (16.05 G). Other parameters are discussed in the text.

Article Snippet: The MatLab-based program dynbirm is available upon request to the corresponding author.

Techniques: